Official Document Processing

instrument-data-to-allotrope

Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full ASM JSON, flattened CSV for easy import, and exportable Python code for data engineers. Common triggers include converting instrument files, standardizing lab data, preparing data...

This skill ships only metadata — no inline instructions. See the source repo for details.

Install this skill

One command (all agents)

Runs the npx skills CLI which auto-detects every AI coding agent you have installed (Claude Code, Cursor, Codex, OpenCode, Windsurf, Copilot, and 51 more).

npx skills add https://github.com/anthropics/knowledge-work-plugins

Alternative: shorthand form

npx skills add anthropics/knowledge-work-plugins

Install to a specific agent

Pick the agent you use. The CLI writes the skill to that agent's standard skill directory.

npx skills add anthropics/knowledge-work-plugins --agent claude-code

npx skills add anthropics/knowledge-work-plugins --agent cursor

npx skills add anthropics/knowledge-work-plugins --agent codex

npx skills add anthropics/knowledge-work-plugins --agent opencode

npx skills add anthropics/knowledge-work-plugins --agent github-copilot

npx skills add anthropics/knowledge-work-plugins --agent windsurf

Manual install (no CLI)

Prefer to skip the CLI? Clone the repo and drop the skill folder into your agent's skills directory.

git clone https://github.com/anthropics/knowledge-work-plugins.git

cp -r knowledge-work-plugins ~/.claude/skills/

For other agents, replace ~/.claude/skills/ with their skill directory — see the full list.

Use it

Once installed, ask your agent to "use the instrument-data-to-allotrope skill" or describe what you want (e.g. "Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope S"). Most agents auto-discover the skill from its SKILL.md description — no slash command needed.

Requires: Node.js 18+ for npx skills. Skill files are MIT-style permissive by default — check the source repo for the actual license.

SKILL.md source

---
name: instrument-data-to-allotrope
description: Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data fo
---

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